let virmid ~configuration bam_pair =
somatic_variant_caller
{Variant_caller.name = "Virmid";
configuration_json = Virmid.Configuration.to_json configuration;
configuration_name = configuration.Virmid.Configuration.name;
make_target =
fun ~run_with ~input ~result_prefix
?more_edges () ->
match input with | Variant_caller.Somatic {normal; tumor} ->
Virmid.run
?more_edges
~configuration ~normal ~tumor
~run_with ~result_prefix
()
}
bam_pair