let mutect2 =
somatic_vc "mutect2"
Tools.Gatk.Configuration.Mutect2.name
Tools.Gatk.Configuration.Mutect2.to_json
Tools.Gatk.Configuration.Mutect2.default
(fun
~configuration ~run_with
~normal ~tumor ~result_prefix ->
Tools.Gatk.mutect2 ~configuration ~run_with
~input_normal_bam:normal
~input_tumor_bam:tumor
~result_prefix `Map_reduce)