sig
module Remove = Biokepi_run_environment.Workflow_utilities.Remove
module Configuration :
sig
type t = {
name : string;
version : [ `V_0_1_6_beta | `V_2_0_2_beta ];
}
val to_json :
Biokepi_bfx_tools.Hisat.Configuration.t -> Yojson.Basic.json
val default_v1 : Biokepi_bfx_tools.Hisat.Configuration.t
val default_v2 : Biokepi_bfx_tools.Hisat.Configuration.t
val get_tool :
Biokepi_bfx_tools.Hisat.Configuration.t ->
Biokepi_run_environment.Machine.Tool.Definition.t
val name : Biokepi_bfx_tools.Hisat.Configuration.t -> string
end
val index :
reference_build:string ->
index_prefix:string ->
configuration:Biokepi_bfx_tools.Hisat.Configuration.t ->
run_with:Biokepi_run_environment.Machine.t ->
< exists : Ketrew_pure.Target.Condition.t;
host : Biokepi_run_environment.Common.KEDSL.Host.t;
is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
path : string >
Biokepi_run_environment.Common.KEDSL.workflow_node
val align :
reference_build:string ->
configuration:Biokepi_bfx_tools.Hisat.Configuration.t ->
fastq:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
paths : string * string option; .. >
Biokepi_run_environment.Common.KEDSL.workflow_node ->
result_prefix:string ->
run_with:Biokepi_run_environment.Machine.t ->
unit ->
< exists : Ketrew_pure.Target.Condition.t;
host : Biokepi_run_environment.Common.KEDSL.Host.t;
is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
path : string >
Biokepi_run_environment.Common.KEDSL.workflow_node
end