sig
module Configuration :
sig
type t = { name : string; parameters : (string * string) list; }
val name : Biokepi_bfx_tools.Strelka.Configuration.t -> string
val to_json :
Biokepi_bfx_tools.Strelka.Configuration.t -> Yojson.Basic.json
val generate_config_file :
path:string ->
Biokepi_bfx_tools.Strelka.Configuration.t ->
Biokepi_run_environment.Common.KEDSL.Program.t
val default : Biokepi_bfx_tools.Strelka.Configuration.t
val test1 : Biokepi_bfx_tools.Strelka.Configuration.t
val empty_exome : Biokepi_bfx_tools.Strelka.Configuration.t
val exome_default : Biokepi_bfx_tools.Strelka.Configuration.t
end
val run :
run_with:Biokepi_run_environment.Machine.t ->
normal:Biokepi_run_environment.Common.KEDSL.bam_file
Biokepi_run_environment.Common.KEDSL.workflow_node ->
tumor:Biokepi_run_environment.Common.KEDSL.bam_file
Biokepi_run_environment.Common.KEDSL.workflow_node ->
result_prefix:string ->
?more_edges:Biokepi_run_environment.Common.KEDSL.workflow_edge list ->
?configuration:Biokepi_bfx_tools.Strelka.Configuration.t ->
unit ->
< as_single_file : Biokepi_run_environment.Common.KEDSL.single_file
Biokepi_run_environment.Common.KEDSL.product;
host : Biokepi_run_environment.Common.KEDSL.Host.t;
is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
path : string; reference_build : string >
Biokepi_run_environment.Common.KEDSL.workflow_node
end