org.hammerlab.guacamole.commands.SomaticJoint

Caller

object Caller extends SparkCommand[Arguments]

Linear Supertypes
SparkCommand[Arguments], Command[Arguments], Logging, Serializable, Serializable, AnyRef, Any
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  1. Caller
  2. SparkCommand
  3. Command
  4. Logging
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  9. def debug(msg: ⇒ Any): Unit

    Attributes
    protected
    Definition Classes
    Logging

  10. val description: String

    A short description of the command, for display in the usage info on the command line.

    A short description of the command, for display in the usage info on the command line.

    Definition Classes
    Caller → Command

  11. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  13. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  14. def error(msg: ⇒ Any): Unit

    Attributes
    protected
    Definition Classes
    Logging

  15. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  17. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  18. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  19. def info(msg: ⇒ Any): Unit

    Attributes
    protected
    Definition Classes
    Logging

  20. def isDebugEnabled: Boolean

    Attributes
    protected
    Definition Classes
    Logging

  21. def isErrorEnabled: Boolean

    Attributes
    protected
    Definition Classes
    Logging

  22. def isInfoEnabled: Boolean

    Attributes
    protected
    Definition Classes
    Logging

  23. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  24. def isTraceEnabled: Boolean

    Attributes
    protected
    Definition Classes
    Logging

  25. def isWarnEnabled: Boolean

    Attributes
    protected
    Definition Classes
    Logging

  26. def logger: Logger

    Attributes
    protected
    Definition Classes
    Logging

  27. def loggerName: String

    Attributes
    protected
    Definition Classes
    Logging

  28. val name: String

    The name of the command, as it will be specified on the command line.

    The name of the command, as it will be specified on the command line.

    Definition Classes
    Caller → Command

  29. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  30. final def notify(): Unit

    Definition Classes
    AnyRef

  31. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  32. def run(args: Arguments, sc: SparkContext): Unit

    Definition Classes
    Caller → SparkCommand

  33. def run(args: Arguments): Unit

    Definition Classes
    SparkCommand → Command

  34. def run(args: String*): Unit

    Definition Classes
    Command

  35. def run(args: Array[String]): Unit

    Run the command.

    Run the command.

    args

    the command line arguments, with the first one chopped off. The first argument specifies which command to run, and is therefore already consumed by Guacamole.

    Definition Classes
    Command

  36. def setDefaultConf(key: String, value: String): Unit

    Definition Classes
    SparkCommand

  37. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  38. def toString(): String

    Definition Classes
    AnyRef → Any

  39. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  40. def trace(msg: ⇒ Any): Unit

    Attributes
    protected
    Definition Classes
    Logging

  41. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  42. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  43. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  44. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  45. def warn(msg: ⇒ Any): Unit

    Attributes
    protected
    Definition Classes
    Logging

Inherited from SparkCommand[Arguments]

Inherited from Command[Arguments]

Inherited from Logging

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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