Module Biokepi_bfx_tools.Bwa.Input_reads (.ml)

module Input_reads: sig .. end

type t = [ `Bam of
           Biokepi_run_environment.Common.KEDSL.bam_file
           Biokepi_run_environment.Common.KEDSL.workflow_node * [ `PE | `SE ]
       | `Fastq of
           Biokepi_run_environment.Common.KEDSL.fastq_reads
           Biokepi_run_environment.Common.KEDSL.workflow_node ] 

val prepare : run_with:Biokepi_run_environment.Machine.t ->
       [< `Bam of
            Biokepi_run_environment.Common.KEDSL.bam_file
            Biokepi_run_environment.Common.KEDSL.workflow_node * 'a
        | `Fastq of 'b ] ->
       [> `Bam of
            Biokepi_run_environment.Common.KEDSL.bam_file
            Biokepi_run_environment.Common.KEDSL.workflow_node * 'a
        | `Fastq of 'b ]

val name : [< `Bam of < product : < path : string; .. >; .. > * 'a
        | `Fastq of < product : < paths : string * 'b; .. >; .. > ] ->
       string

val sample_name : [< `Bam of < product : < escaped_sample_name : 'a; .. >; .. > * 'b
        | `Fastq of < product : < escaped_sample_name : 'a; .. >; .. > ] ->
       'a

val read_group_id : [< `Bam of < product : < path : string; .. >; .. > * 'a
        | `Fastq of < product : < paths : string * 'b; .. >; .. > ] ->
       string

val as_dependencies : [< `Bam of
            < is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
              .. >
            Biokepi_run_environment.Common.KEDSL.workflow_node * 'a
        | `Fastq of
            < is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
              .. >
            Biokepi_run_environment.Common.KEDSL.workflow_node ] ->
       Biokepi_run_environment.Common.KEDSL.workflow_edge list