Module Biokepi_bfx_tools.Cycledash (.ml)

module Cycledash: sig .. end

val post_to_cycledash_script : string

val post_vcf : run_with:Biokepi_run_environment.Machine.t ->
       vcf:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
             path : string; .. >
           Biokepi_run_environment.Common.KEDSL.workflow_node ->
       variant_caller_name:string ->
       dataset_name:string ->
       ?truth_vcf:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t
                              option;
                    path : string; .. >
                  Biokepi_run_environment.Common.KEDSL.workflow_node ->
       ?normal_bam:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t
                               option;
                     path : string; .. >
                   Biokepi_run_environment.Common.KEDSL.workflow_node ->
       ?tumor_bam:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t
                              option;
                    path : string; .. >
                  Biokepi_run_environment.Common.KEDSL.workflow_node ->
       ?params:string ->
       ?witness_output:string ->
       string ->
       < is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option >
       Biokepi_run_environment.Common.KEDSL.workflow_node