Module Biokepi_bfx_tools.Optitype (.ml)

module Optitype: sig .. end

type product = <

	`is_done : Ketrew_pure.Target.Condition.t option;`
	`path : string;`

val hla_type : work_dir:string ->
       run_with:Biokepi_run_environment.Machine.t ->
       fastq:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
               paths : string * string option; .. >
             Biokepi_run_environment.Common.KEDSL.workflow_node ->
       run_name:string ->
       [< `DNA | `RNA ] ->
       product
       Biokepi_run_environment.Common.KEDSL.workflow_node

Run OptiType in `RNA or `DNA mode.

Please provide a fresh work_dir directory, it will be deleted in case of failure.