Module Biokepi_pipeline_edsl.Common_pipelines.Somatic (.ml)

module Somatic: sig .. end

type from_fastqs = normal_fastqs:Pipeline.Construct.input_fastq ->
       tumor_fastqs:Pipeline.Construct.input_fastq ->
       dataset:string -> Pipeline.vcf Pipeline.t list 

val crazy_example : normal_fastqs:Pipeline.Construct.input_fastq ->
       tumor_fastqs:Pipeline.Construct.input_fastq ->
       dataset:string -> Pipeline.vcf Pipeline.t list

val from_fastqs_with_variant_caller : variant_caller:(Pipeline.bam_pair Pipeline.t -> 'a) ->
       normal_fastqs:Pipeline.Construct.input_fastq ->
       tumor_fastqs:Pipeline.Construct.input_fastq -> dataset:string -> 'a list