Module Biokepi_pipeline_edsl.To_json.Hla_utils (.ml)

module Hla_utils: Biokepi_run_environment.Hla_utilities

type predictor_type = [ `NetMHC
       | `NetMHCIIpan
       | `NetMHCcons
       | `NetMHCcons_IEDB
       | `NetMHCpan
       | `NetMHCpan_IEDB
       | `Random
       | `SMM
       | `SMM_IEDB
       | `SMM_PMBEC
       | `SMM_PMBEC_IEDB ] 

val predictor_to_string : [< `NetMHC
        | `NetMHCIIpan
        | `NetMHCcons
        | `NetMHCcons_IEDB
        | `NetMHCpan
        | `NetMHCpan_IEDB
        | `Random
        | `SMM
        | `SMM_IEDB
        | `SMM_PMBEC
        | `SMM_PMBEC_IEDB ] ->
       string

val predictor_to_tool : run_with:Machine.t ->
       [> `NetMHC | `NetMHCIIpan | `NetMHCcons | `NetMHCpan ] ->
       (Biokepi_run_environment.Common.KEDSL.phony_workflow * Common.KEDSL.Program.t)
       option

val sanitize_hlarp_out_for_mhctools : run_with:Machine.t ->
       hlarp_result:< is_done : Common.KEDSL.Condition.t option; path : string; .. >
                    Biokepi_run_environment.Common.KEDSL.workflow_node ->
       output_path:string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node