Module Biokepi_run_environment.Workflow_utilities.Download (.ml)

module Download: sig .. end

val wget_program : ?output_filename:string -> string -> Common.KEDSL.Program.t

val wget_to_folder : host:Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       test_file:string ->
       destination:string ->
       string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val wget : host:Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       string ->
       string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val wget_gunzip : host:Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination:string ->
       string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val wget_bunzip2 : host:Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination:string ->
       string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val wget_untar : host:Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_folder:string ->
       tar_contains:string ->
       string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

type tool_file_location = [ `Fail of string | `Scp of string | `Wget of string ] 

val get_tool_file : identifier:string ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       host:Common.KEDSL.Host.t ->
       install_path:string ->
       [< `Fail of 'a & string | `Scp of string | `Wget of string ] ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val gsutil_cp : run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       host:Common.KEDSL.Host.t ->
       url:string ->
       local_path:string ->
       < exists : Ketrew_pure.Target.Condition.t; host : Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Common.KEDSL.Condition.t option; path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node