Module Biokepi_bfx_tools.Mosaik (.ml)

module Mosaik: sig .. end

module Remove: Biokepi_run_environment.Workflow_utilities.Remove

val index : reference_build:string ->
       run_with:Biokepi_run_environment.Machine.t ->
       < exists : Ketrew_pure.Target.Condition.t;
         host : Biokepi_run_environment.Common.KEDSL.Host.t;
         is_bigger_than : int -> Ketrew_pure.Target.Condition.t;
         is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
         path : string >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val align : reference_build:string ->
       fastq:< is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
               paths : string * string option; .. >
             Biokepi_run_environment.Common.KEDSL.workflow_node ->
       ?sequencer:string ->
       result_prefix:string ->
       run_with:Biokepi_run_environment.Machine.t ->
       unit ->
       < escaped_sample_name : string;
         host : Biokepi_run_environment.Common.KEDSL.Host.t;
         is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option;
         path : string; reference_build : string; sample_name : string;
         sorting : [ `Coordinate | `Read_name ] option >
       Biokepi_run_environment.Common.KEDSL.workflow_node