Module Biokepi_environment_setup.Conda (.ml)

module Conda: sig .. end

type conda_version_type = [ `Latest | `Version of string ]

type conda_environment_type = {

	`name : string;`
	python_version : [ `Python2 \| `Python3 ];
	`channels : string list;`
	`base_packages : (string * conda_version_type) list;`
	`banned_packages : string list;`
	`install_path : string;`
	`main_subdir : string;`
	`envs_subdir : string;`

}

val setup_environment : ?custom_channels:string list ->
       ?base_packages:(string * conda_version_type)
                      list ->
       ?banned_packages:string list ->
       ?main_subdir:string ->
       ?envs_subdir:string ->
       ?python_version:[ `Python2 | `Python3 ] ->
       string -> string -> conda_environment_type

val environment_path : conda_env:conda_environment_type -> string

val configured : conda_env:conda_environment_type ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       < is_done : Biokepi_run_environment.Common.KEDSL.Condition.t option >
       Biokepi_run_environment.Common.KEDSL.workflow_node

val init_env : conda_env:conda_environment_type ->
       unit -> Biokepi_run_environment.Common.KEDSL.Program.t

val deactivate_env : conda_env:conda_environment_type ->
       unit -> Biokepi_run_environment.Common.KEDSL.Program.t