Module Biokepi_environment_setup.Download_reference_genomes (.ml)

module Download_reference_genomes: sig .. end

type pull_function = toolkit:Biokepi_run_environment.Machine.Tool.Kit.t ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t 

val pull_b37 : toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t

val pull_b37decoy : toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t

val pull_b38 : toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t

val pull_hg19 : toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t

val pull_hg18 : toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t

val pull_mm10 : toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t

val default_genome_providers : (Biokepi_run_environment.Reference_genome.name *
        (toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                  Biokepi_run_environment.Machine.Tool.t option) ->
         host:Biokepi_run_environment.Common.KEDSL.Host.t ->
         run_program:Biokepi_run_environment.Machine.Make_fun.t ->
         destination_path:string -> Biokepi_run_environment.Reference_genome.t))
       list

val get_reference_genome : Biokepi_run_environment.Reference_genome.name ->
       toolkit:(Biokepi_run_environment.Machine.Tool.Definition.t ->
                Biokepi_run_environment.Machine.Tool.t option) ->
       host:Biokepi_run_environment.Common.KEDSL.Host.t ->
       run_program:Biokepi_run_environment.Machine.Make_fun.t ->
       destination_path:string -> Biokepi_run_environment.Reference_genome.t