Module Biokepi_bfx_tools.Topiary.Configuration (.ml)

module Configuration: sig .. end

type t = {

	`name : string;`
	`rna_gene_fpkm_tracking_file : string option;`
	`rna_min_gene_expression : float;`
	`rna_transcript_fpkm_tracking_file : string option;`
	`rna_min_transcript_expression : float;`
	`rna_transcript_fkpm_gtf_file : string option;`
	`mhc_epitope_lengths : int list;`
	`only_novel_epitopes : bool;`
	`ic50_cutoff : float;`
	`percentile_cutoff : float;`
	`padding_around_mutation : int option;`
	`self_filter_directory : string option;`
	`skip_variant_errors : bool;`
	`parameters : (string * string) list;`

}

val to_json : t -> Yojson.Basic.json

val render : t -> string list

val default : t

val name : t -> string